PTGBase is an integrated database to study tandem repeated genes in plants. If applicable, matched GSS contigs, community annotations, similar proteins, and microarray probes are displayed. The Plant GDB Genome Browser displays current gene structure models and transcript evidence from spliced alignments of EST and cDNA sequences. Where possible, information on ploidy level, chromosome number, genome size and life cycle is also available. It provides information on the numbers and positions of ribosomal DNA signals and their structures. The Plant rDNA Database comprises of data from over 600 publications and approximately 3000 plant species. Users can choose between analysing C-value data across different groups of plants, or searching just part of the database by selecting the specific plant group of interest. Kew Royal Botanic Garden’s Plant DNA C-values database contains C-values for 8,510 angiosperm, gymnosperm, pteridopghyte, bryophyte and algal species. Currently Phytozome provides access to 58 sequenced and annotated green plant genomes. Phytozome is a plant comparative genomics portal wherein families of related genes representing the modern descendants of ancestral genes are constructed at key phylogenetic nodes.
Information on the organism, genome (for example, chromosome number and genome size), markers and genome specific databases can be accessed. The Plant Genome Database Japan’s DNA Marker and Linkage Database brings together information from smaller databases and literature. The genome database currently comprises of 16,326 species and can be sorted by kingdom, group and subgroup. The National Center for Biotechnology Information provides access to genomic information in order to advance science. Genome sizes are currently available for 1,219 species based on 2,768 records from 133 publications, covering approximately 5% of species, 10% of genera, 40% of tribes and 50% of subfamilies. The Genome Size in Asteraceae Database is an exhaustive catalogue of genome size data for the family Asteraceae, making Asteraceae genome size data easily accessible to scientists. Data can be searched by gene identifier or by BLAST sequence search.
Ensembl PlantsĮnsembl Plants is a genome-centric portal for plants of scientific interest, providing statistics (for example, base pairs and genome size) and information on assembly, annotation, regulation, variation and sequences. So we gathered together 10 of the best plant genome databases to make your job easier.ī brings together information from various studies to provide approximate genome size information for the various Brassica species. Genomics data science researchers today typically rely on familiar software implementation tools like Python and R as well as more specialized programs including Bioconductor and Galaxy.Finding the information that you need on plant genomes is difficult when published data is spread across a vast amount of journals and the rest is unpublished. Given this enormous complexity, rapid advances in the field of data science along with its application to molecular biology through the related disciplines of computational biology and bioinformatics has made it possible to compare, analyze, and draw insights from genomics far more rapidly than ever before. Human beings have over 3 billion DNA pairs and 20,000 genes in their genomes, which can influence everything from our physical appearance to the functioning of our organ systems. In recent years, the study of the genomics of humans and other organisms has emerged as an important enabler of advances in many areas including the prevention and treatment of disease, improvement of the sustainability and productivity of agriculture, and furthering our understanding of the biology of humans, plants, and animals. While the basic theory of DNA is over a century old, the sequencing of the first complete human genome was only accomplished relatively recently, in 2003 as part of the Human Genome Project. Genomics is the study of the ways in which all of the genes in an organism’s DNA - its genome - interact with each other and the environment.
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